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1

Direct observation of base-pair stepping by RNA polymerase

Abbondanzieri, Elio A., Greenleaf, William J., Shaevitz, Joshua W., Landick, Robert, Block, Steven M.

Journal:

Year:

2005

Language:

english

File:

PDF, 1.38 MB

english, 2005

2

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

Shaevitz, Joshua W., Abbondanzieri, Elio A., Landick, Robert, Block, Steven M.

Journal:

Year:

2003

Language:

english

File:

PDF, 333 KB

english, 2003

3

Curvature-Dependent Localization of the Bacterial Cytoskeleton Drives De Novo Morphogenesis in Escherichia Coli

Billings, Gabriel H., Ouzounov, Nikolay, Ursell, Tristan, Shaevitz, Joshua W., Gitai, Zemer, Huang, Kerwyn Casey

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 76 KB

english, 2014

4

Fast animal pose estimation using deep neural networks

Pereira, Talmo D., Aldarondo, Diego E., Willmore, Lindsay, Kislin, Mikhail, Wang, Samuel S.-H., Murthy, Mala, Shaevitz, Joshua W.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.81 MB

english, 2019

5

From individual cell motility to collective behaviors: insights from a prokaryote, Myxococcus xanthus

Yong Zhang, Adrien Ducret, Joshua Shaevitz, Tâm Mignot

Journal:

FEMS Microbiology Reviews

Year:

2012

Language:

english

File:

PDF, 504 KB

english, 2012

6

Super-resolution for a 3D world

Shaevitz, Joshua W

Journal:

Year:

2008

Language:

english

File:

PDF, 220 KB

english, 2008

7

Image analysis in fluorescence microscopy: Bacterial dynamics as a case study

Sven van Teeffelen, Joshua W. Shaevitz, Zemer Gitai

Journal:

Year:

2012

Language:

english

File:

PDF, 518 KB

english, 2012

8

Effect of aberration on height calibration in three-dimensional localization-based microscopy and particle tracking

Deng, Yi, Shaevitz, Joshua W.

Journal:

Year:

2009

Language:

english

File:

PDF, 422 KB

english, 2009

9

Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function

Shaevitz, Joshua W., Fletcher, Daniel A.

Journal:

Journal of the Optical Society of America A

Year:

2007

Language:

english

File:

PDF, 302 KB

english, 2007

10

A Parallel Product-Convolution approach for representing the depth varying Point Spread Functions in 3D widefield microscopy based on principal component analysis

Arigovindan, Muthuvel, Shaevitz, Joshua, McGowan, John, Sedat, John W., Agard, David A.

Journal:

Year:

2010

Language:

english

File:

PDF, 8.58 MB

english, 2010

11

Spiroplasma Swim by a Processive Change in Body Helicity

Joshua W. Shaevitz, Joanna Y. Lee, Daniel A. Fletcher

Journal:

Year:

2005

Language:

english

File:

PDF, 231 KB

english, 2005

12

Active and passive mechanisms of intracellular transport and localization in bacteria

Tâm Mignot, Joshua W Shaevitz

Journal:

Current Opinion in Microbiology

Year:

2008

Language:

english

File:

PDF, 412 KB

english, 2008

13

The molecular origins of chiral growth in walled cells

Kerwyn Casey Huang, David W. Ehrhardt, Joshua W. Shaevitz

Journal:

Current Opinion in Microbiology

Year:

2012

Language:

english

File:

PDF, 3.57 MB

english, 2012

14

An Automated Two-Dimensional Optical Force Clamp for Single Molecule Studies

Lang, Matthew J., Asbury, Charles L., Shaevitz, Joshua W., Block, Steven M.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 516 KB

english, 2002

15

Global Order and Self-Organization in the Escherichia Coli Cell Wall

Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

16

Multiphase Recovery of Escherichia Coli to Hyperosmotic Shock

Pilizota, Teuta, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

17

Spatially-Resolved Measurements of Bacillus Subtilis Cell Wall Growth Dynamics during Elongation and Division

Deng, Yi, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

18

Statistical Kinetics of Macromolecular Dynamics

Shaevitz, Joshua W., Block, Steven M., Schnitzer, Mark J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 140 KB

english, 2005

19

Picocalorimetry of Transcription by RNA Polymerase

Abbondanzieri, Elio A., Shaevitz, Joshua W., Block, Steven M.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 185 KB

english, 2005

20

Slow Stress Propagation in Adherent Cells

Rosenbluth, Michael J., Crow, Ailey, Shaevitz, Joshua W., Fletcher, Daniel A.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

21

Combining Modeling and Experiment to Understand Bacterial Growth

Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 60 KB

english, 2013

22

Plasmolysis and Cell Shape Depend on Solute Outer-Membrane Permeability during Hyperosmotic Shock in E. coli

Pilizota, Teuta, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 3.06 MB

english, 2013

23

Direct Evidences of a Motility Motors in Myxococcus Xanthus

Sun, Mingzhai, Ducret, Adrien, Mignot, Tam, Shaevitz, Joshua

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 64 KB

english, 2010

24

The Response of Single E. Coli Cells to Changes in External Osmolarity

Pilizota, Teuta, Deng, Yi, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 69 KB

english, 2010

25

Dynamics and Force Generation by Single Motor Complexes in M. Xanthus

Czerwinski, Fabian, Sun, Mingzhai, Mignot, Tam, Shaevitz, Joshua

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

26

Direct Measurement of the Relative Contributions of Turgor Pressure, the Peptidoglycan Cell Wall and Cytoskeletal Filaments to Gram-negative Prokaryotic Cell Mechanics using AFM

Sun, Mingzhai, Deng, Yi, Santoyo, Hugo Arellano, Wang, Siyuan, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 41 KB

english, 2009

27

MreB, A Prokaryotic Actin Homologue, Contributes To Cell Stiffness In E. Coli

Wang, Siyuan, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

28

Bacteria Regulate Turgor Pressure in Order to Grow

Pilizota, Teuta, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 49 KB

english, 2011

29

Diffusion of Public Goods Prevents Coexistence of Cooperators and Cheaters in a Stochastic Competition Model

Borenstein, David Bruce, Meir, Yigal, Shaevitz, Joshua W., Wingreen, Ned S.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 36 KB

english, 2013

30

Measuring Peptidoglycan Elasticity and Stress-Stiffening of Live Bacterial Cells

Deng, Yi, Sun, Mingzhai, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 52 KB

english, 2011

31

Origins of Escherichia coli growth rate and cell shape changes at high external osmolality

Pilizota, Teuta, Shaevitz, Joshua

Journal:

New Biotechnology

Year:

2014

Language:

english

File:

PDF, 68 KB

english, 2014

32

De novo morphogenesis in L-forms via geometric control of cell growth

Billings, Gabriel, Ouzounov, Nikolay, Ursell, Tristan, Desmarais, Samantha M., Shaevitz, Joshua, Gitai, Zemer, Huang, Kerwyn Casey

Journal:

Molecular Microbiology

Year:

2014

Language:

english

File:

PDF, 11.18 MB

english, 2014

33

Passive Mechanical Forces Control Cell-Shape Change during Drosophila Ventral Furrow Formation

Polyakov, Oleg, He, Bing, Swan, Michael, Shaevitz, Joshua W., Kaschube, Matthias, Wieschaus, Eric

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

34

Origins of Escherichia coli Growth Rate and Cell Shape Changes at High External Osmolality

Pilizota, Teuta, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

35

Direct Measurement of Cell Wall Stress Stiffening and Turgor Pressure in Live Bacterial Cells

Deng, Yi, Sun, Mingzhai, Shaevitz, Joshua W.

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 388 KB

english, 2011

36

The bacterial actin MreB rotates, and rotation depends on cell-wall assembly

Sven van Teeffelen, Siyuan Wang, Leon Furchtgott, Kerwyn Casey Huang, Ned S. Wingreen, Joshua W. Shaevitz and Zemer Gitai

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.34 MB

english, 2011

37

Curvature and torsion in growing actin networks

Shaevitz, Joshua W, Fletcher, Daniel A

Journal:

Physical Biology

Year:

2008

Language:

english

File:

PDF, 507 KB

english, 2008

38

A Versatile Class of Cell Surface Directional Motors Gives Rise to Gliding Motility and Sporulation in Myxococcus xanthus

Wartel, Morgane, Ducret, Adrien, Thutupalli, Shashi, Czerwinski, Fabian, Le Gall, Anne-Valérie, Mauriello, Emilia M. F., Bergam, Ptissam, Brun, Yves V., Shaevitz, Joshua, Mignot, Tâm, Laub, Michael T.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.22 MB

english, 2013

39

Myxococcus xanthus Gliding Motors Are Elastically Coupled to the Substrate as Predicted by the Focal Adhesion Model of Gliding Motility

Balagam, Rajesh, Litwin, Douglas B., Czerwinski, Fabian, Sun, Mingzhai, Kaplan, Heidi B., Shaevitz, Joshua W., Igoshin, Oleg A., Whitworth, David E.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

40

Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation

Thutupalli, Shashi, Sun, Mingzhai, Bunyak, Filiz, Palaniappan, Kannappan, Shaevitz, Joshua W.

Journal:

Journal of The Royal Society Interface

Year:

2015

Language:

english

File:

PDF, 914 KB

english, 2015

41

Motor-driven intracellular transport powers bacterial gliding motility

Mingzhai Sun, Morgane Wartel, Eric Cascales, Joshua W. Shaevitz, Tâm Mignot and Thomas J. Silhavy

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

42

Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans

Nguyen, Jeffrey P., Shipley, Frederick B., Linder, Ashley N., Plummer, George S., Liu, Mochi, Setru, Sagar U., Shaevitz, Joshua W., Leifer, Andrew M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.83 MB

english, 2015

43

Actin-like cytoskeleton filaments contribute to cell mechanics in bacteria

Siyuan Wang, Hugo Arellano-Santoyo, Peter A. Combs, Joshua W. Shaevitz and Lawrence Rothfield

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

44

The PSI–U1 snRNP interaction regulates male mating behavior in Drosophila

Wang, Qingqing, Taliaferro, J. Matthew, Klibaite, Ugne, Hilgers, Valérie, Shaevitz, Joshua W., Rio, Donald C.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

45

3D Microscopy of Rod-Shaped Bacteria Reveals Roles of MreB in Diameter Control and Center-Line Curvature

Bratton, Benjamin P., Nguyen, Jeffrey P., Ouzounov, Nikolay, Morgenstein, Randy M., Gitai, Zemer, Shaevitz, Joshua P.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 44 KB

english, 2015

46

MreB Senses Local Gaussian Curvature to Pattern Rod-Like Growth of the Bacterial Cell Wall

Bratton, Benjamin P., Nguyen, Jeffrey P., Ouzounov, Nikolay, Morgenstein, Randy M., Gitai, Zemer, Shaevitz, Joshua W.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 45 KB

english, 2016

47

RodZ links MreB to cell wall synthesis to mediate MreB rotation and robust morphogenesis

Morgenstein, Randy M., Bratton, Benjamin P., Nguyen, Jeffrey P., Ouzounov, Nikolay, Shaevitz, Joshua W., Gitai, Zemer

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.29 MB

english, 2015

48

Predictability and hierarchy in Drosophila behavior

Berman, Gordon J., Bialek, William, Shaevitz, Joshua W.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.74 MB

english, 2016

49

An unsupervised method for quantifying the behavior of paired animals

Klibaite, Ugne, Berman, Gordon J, Cande, Jessica, Stern, David L, Shaevitz, Joshua W

Journal:

Physical Biology

Year:

2017

Language:

english

File:

PDF, 549 KB

english, 2017

50

The cytoskeleton: I-beams of the cell

Shaevitz, Joshua, Nørrelykke, Simon

Journal:

Year:

2010

Language:

english

File:

PDF, 451 KB

english, 2010

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